Dear staff members,
We are from CAS-MPG Partner Institute for Computational Biology, Shanghai,
China. Nowadays, we are doing a project about Kangaroo rat. Your database have
helped us a lot for our work, but there's still a problem made us very confused.
The problem is: some scaffods in the pairwise alignments between human and
kangaroo rat cannot be found in the kangaroo rat genome.
For example, we downloaded the pairwise alignments between human and
kangaroo rat from http://hgdownload.cse.ucsc.edu/goldenPath/hg19/vsDipOrd1/ .
In the first lines of the file "chr1.hg19.dipOrd1.net.axt", we can see :
0 chr1 12177 12243 scaffold_163392 995 1061 - 3781
But actually we cannot found scaffold_163392 in the kangaroo rat genome.
The kangaroo rat assembly ,which is dipOrd1, Jul. 2008, Broad Institute dipOrd1
(NCBI project 20385, ABRO01000000), can be found in Genebank.
(http://www.ncbi.nlm.nih.gov/genome/?term=ABRO01&submit=Go and
http://www.ncbi.nlm.nih.gov/nuccore?term=EQ846228:EQ921757[PACC] ).
We are looking forward to your replay.
Gu Zhili
11.11.22
P.S. Sorry for my poor English. ^_^
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