Hello everyone, I am interested in using hgWiggle program, so I downloaded jkent package and trying to build the pogram from the source
I have a compilation error which says : ../../../lib/x86_64/jkhgap.a(jksql.o): In function `sqlEscapeString2': /fs/sh-code/Software/JKENT/src/hg/lib/jksql.c:2020: undefined reference to `mysql_escape_string' ../../../lib/x86_64/jkhgap.a(jksql.o): In function `sqlConnRemote': /fs/sh-code/Software/JKENT/src/hg/lib/jksql.c:728: undefined reference to `mysql_init' /fs/sh-code/Software/JKENT/src/hg/lib/jksql.c:733: undefined reference to `mysql_real_connect' /fs/sh-code/Software/JKENT/src/hg/lib/jksql.c:745: undefined reference to `mysql_error' /fs/sh-code/Software/JKENT/src/hg/lib/jksql.c:748: undefined reference to `mysql_error' ../../../lib/x86_64/jkhgap.a(jksql.o): In function `sqlConnCacheEntrySetDb': /fs/sh-code/Software/JKENT/src/hg/lib/jksql.c:1862: undefined reference to `mysql_select_db' /fs/sh-code/Software/JKENT/src/hg/lib/jksql.c:1865: undefined reference to `mysql_error' ../../../lib/x86_64/jkhgap.a(jksql.o): In function `sqlLastAutoId': /fs/sh-code/Software/JKENT/src/hg/lib/jksql.c:1749: undefined reference to `mysql_insert_id' ../../../lib/x86_64/jkhgap.a(jksql.o): In function `sqlFieldCount': /fs/sh-code/Software/JKENT/src/hg/lib/jksql.c:1488: undefined reference to `mysql_num_fields' ../../../lib/x86_64/jkhgap.a(jksql.o): In function `sqlCountColumns': /fs/sh-code/Software/JKENT/src/hg/lib/jksql.c:1469: undefined reference to `mysql_field_count' ../../../lib/x86_64/jkhgap.a(jksql.o): In function `sqlFieldColumn': /fs/sh-code/Software/JKENT/src/hg/lib/jksql.c:1454: undefined reference to `mysql_num_fields' /fs/sh-code/Software/JKENT/src/hg/lib/jksql.c:1458: undefined reference to `mysql_fetch_field_direct' ../../../lib/x86_64/jkhgap.a(jksql.o): In function `sqlFieldName': /fs/sh-code/Software/JKENT/src/hg/lib/jksql.c:1444: undefined reference to `mysql_fetch_field' ../../../lib/x86_64/jkhgap.a(jksql.o): In function `sqlVaWarn': /fs/sh-code/Software/JKENT/src/hg/lib/jksql.c:844: undefined reference to `mysql_error' /fs/sh-code/Software/JKENT/src/hg/lib/jksql.c:844: undefined reference to `mysql_errno' ../../../lib/x86_64/jkhgap.a(jksql.o): In function `sqlMaybeNextRow': /fs/sh-code/Software/JKENT/src/hg/lib/jksql.c:1138: undefined reference to `mysql_fetch_row' /fs/sh-code/Software/JKENT/src/hg/lib/jksql.c:1140: undefined reference to `mysql_errno' ../../../lib/x86_64/jkhgap.a(jksql.o): In function `sqlUseOrStore': /fs/sh-code/Software/JKENT/src/hg/lib/jksql.c:893: undefined reference to `mysql_real_query' /fs/sh-code/Software/JKENT/src/hg/lib/jksql.c:906: undefined reference to `mysql_errno' ../../../lib/x86_64/jkhgap.a(jksql.o): In function `sqlStoreResult': /fs/sh-code/Software/JKENT/src/hg/lib/jksql.c:1426: undefined reference to `mysql_store_result' ../../../lib/x86_64/jkhgap.a(jksql.o): In function `sqlGetResult': /fs/sh-code/Software/JKENT/src/hg/lib/jksql.c:1186: undefined reference to `mysql_use_result' ../../../lib/x86_64/jkhgap.a(jksql.o): In function `sqlGetResultExt': /fs/sh-code/Software/JKENT/src/hg/lib/jksql.c:1161: undefined reference to `mysql_use_result' /fs/sh-code/Software/JKENT/src/hg/lib/jksql.c:1166: undefined reference to `mysql_errno' /fs/sh-code/Software/JKENT/src/hg/lib/jksql.c:1168: undefined reference to `mysql_error' ../../../lib/x86_64/jkhgap.a(jksql.o): In function `sqlFreeResult': /fs/sh-code/Software/JKENT/src/hg/lib/jksql.c:491: undefined reference to `mysql_free_result' ../../../lib/x86_64/jkhgap.a(jksql.o): In function `sqlUpdateRows': /fs/sh-code/Software/JKENT/src/hg/lib/jksql.c:1224: undefined reference to `mysql_info' ../../../lib/x86_64/jkhgap.a(jksql.o): In function `sqlLoadTabFile': /fs/sh-code/Software/JKENT/src/hg/lib/jksql.c:1341: undefined reference to `mysql_info' ../../../lib/x86_64/jkhgap.a(jksql.o): In function `sqlTableExists': /fs/sh-code/Software/JKENT/src/hg/lib/jksql.c:1073: undefined reference to `mysql_use_result' ../../../lib/x86_64/jkhgap.a(jksql.o): In function `sqlDisconnect': /fs/sh-code/Software/JKENT/src/hg/lib/jksql.c:534: undefined reference to `mysql_close' ../../../lib/x86_64/jkhgap.a(jksql.o): In function `sqlTableSizeIfExists': /fs/sh-code/Software/JKENT/src/hg/lib/jksql.c:1088: undefined reference to `mysql_use_result' collect2: ld returned 1 exit status make: *** [hgLoadWiggle] Error 1 It seems like it is related to a MySQL problem do you have any idea on how to solve this problem ? Cheers Rad _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
