Hi Yaping, If you are familiar with MySQL you can access our public MySQL database:
http://genome.ucsc.edu/FAQ/FAQdownloads.html#download29 For the RefSeq, the tables are updated nightly. The current release is 50. The query is: select * from gbLoaded where srcDb='RefSeq' ; To find the complete version history for the Ensembl gene track you can use the following query: mysql --user=genome --host=genome-mysql.cse.ucsc.edu -A -N -e 'select db,name,version,dateReference from trackVersion where db="hg19" and name="ensGene";' hgFixed The last one is the most recent one loaded on that assembly which currently is 64. If you have further questions, please contact the mailing list: [email protected]. Vanessa Kirkup Swing UCSC Genome Bioinformatics Group ---------- Forwarded message ---------- From: Fang, Yaping <[email protected]> Date: Tue, Dec 13, 2011 at 6:41 AM Subject: [Genome] source data base version To: "[email protected]" <[email protected]> Hi all, We can get the refGene (Reference gene) and ensGene(ensembl gene) annotaion from UCSC. However, I do not know the version of refGene and ensGene. Could someone have any opinion about this? Thank you! Best all! Yaping _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
