Hi Sarah, The Table Browser is a useful tool for extracting this information (see this previously answered question for more details: https://lists.soe.ucsc.edu/pipermail/genome/2005-June/007640.html). From main page, click on "Tables" on the top blue navigation bar. After selecting a clade, genome, and assembly of your choice, set the following:
group: Variation and Repeats track: RepeatMasker table: rmsk region: genome, or define a region filter: click create, then set repClass does match "simple_repeat", click 'submit' output format: sequence output file: enter a file name to save your results to a file, or leave blank to display results in the browser Click 'get output'. On the following page, select the appropriate options then click 'get output'. For more information on how to use the Table Browser, please refer to our help pages: http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html Feel free to contact us again at [email protected] if you have any further questions. --- Luvina Guruvadoo UCSC Genome Bioinformatics Group On 12/16/2011 4:00 AM, Lake, Sarah wrote: > Could you describe how to find the microsatellite repeat primer sequences on > the browser please? > > Kind regards, > Sarah > > Sarah Lake B.Sc., Ph.D. > Senior Postdoctoral Researcher > Liverpool Ocular Oncology Research Group > > Molecular and Clinical Cancer Medicine > University of Liverpool > 6th floor, Duncan Building > Daulby Street > Liverpool > L69 3GA > > Tel: 0151 706 4869 > Fax: 0151 706 5883 > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
