Hi Oz, Thank you for bringing this to our attention. We are currently looking into this issue and hope to have it resolved soon.
Regards, --- Luvina Guruvadoo UCSC Genome Bioinformatics Group On 12/15/2011 7:45 AM, oz solomon wrote: > To UCSC genome browser team, > I've recently encountered duplicated records in DARNED track (Human RNA > editing track) of version hg19. > In hg18 version there were 42055 records, all of them unique. > However, when I used hg19 version, I've noticed that there are 42045 > records with 42039 unique records (wc -l Darned.hg19.bed => 42045 but cat > Darned.hg19.bed | sort| uniq | wc -l => 42039). > When I visualized these regions in the genome browser they are shown as 2 > elements with the same genomic position and the same name. > Is this problem a result of liftover between genome versions and > non-updated track? > > The non-unique records are: > #The record in Darned.hg19.bed> number of times in the file > chr16 22517492 22517493 chr16.22517493 1000 + 22517492 > 22517493> 2 > chr17 36333356 36333357 chr17.36333357 1000 - 36333356 > 36333357> 2 > chr17 36332281 36332282 chr17.36332282 1000 - 36332281 > 36332282> 2 > chr17 36333402 36333403 chr17.36333403 1000 - 36333402 > 36333403> 2 > chr17 36333367 36333368 chr17.36333368 1000 - 36333367 > 36333368> 2 > chr17 36333372 36333373 chr17.36333373 1000 - 36333372 > 36333373> 2 > > I know it sounds petty but I just note this for better curation of this > track. > Thanks in advance, > Oz Solomon, Ph.D. student > Cancer Research Center, Sheba hospital, Israel > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
