Hi David, We recommend that that if you want whole rna exons, you will need to start by selecting the other track, rna_exons, first in the table browser, then do the intersection. If you want want a base-pair-wise intersection, you can choose the "Base-pair-wise intersection (AND)" option when creating an intersection in the table browser.
If you have further questions, please email the list: [email protected]. Vanessa Kirkup Swing UCSC Genome Bioinformatics Group ---------- Forwarded message ---------- From: Managadze, David (NIH/NLM/NCBI) [F] <[email protected]> Date: Tue, Dec 20, 2011 at 1:51 PM Subject: [Genome] Get concatenated exon sequences of my regions spanning several genes To: "[email protected]" <[email protected]> I have certain regions of mm9 track. (And I also know that there are one or more ncRNA genes in these regions) I would like to get the concatenated sequences of all exons corresponding to each of my region as one fasta record. Could you please suggest the way? I tried to create two tracks: my_regions and rna_exons Then I tried to get the sequence of my_regions that intersect with rna_exons track. The browser still returns the whole my_regions and not just exons because it returns the whole of my_regions that intersect with exons, not just exon parts. (which perhaps is logical but still...) Thanks in advance for your help. David _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
