Hello, Rajesh. The file you downloaded is the most current version. The RefGene table and its associated download file are updated regularly. The version of the file you referenced is for the human assembly hg18. I performed a search in the Browser for MOD2 and KRC in hg18. I found no results for MOD2, but I did find LMOD2, TMOD2 and ELMOD2. I also found no results for KRC, but I did find KRCC1. This is consistent with the contents of the refGene.txt file and the NCBI database.
Could you please provide a specific example of a search result that you found in the Browser (including RefSeq ID) but did not find in refGene.txt? Please contact us again at [email protected] if you have any further questions. --- Steve Heitner UCSC Genome Bioinformatics Group -----Original Message----- From: [email protected] [mailto:[email protected]] On Behalf Of Patidar, Rajesh (NIH/NCI) [C] Sent: Friday, December 23, 2011 10:12 AM To: [email protected] Subject: [Genome] Missing genes in refGene.txt file Hi, I downloaded the the refGene.txt file from ftp://hgdownload.cse.ucsc.edu/goldenPath/hg18/database/ and was looking for a list of genes I have and wanted to know there coordinates but the list I have, is longer than the refGene.txt's gene list. For example I cannot find MOD2 or KRC and many more. But I can get them on genome browser. I am wondering where I can get the most complete list of human genes build 18 and there coordinates. Happy Holidays, Thanks, Rajesh Patidar(NIH/NCI)[C] _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
