Hello, Francesco. You can do this by using our Table Browser. If you're unfamiliar with the Table Browser, please see the User's Guide at http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html.
Assuming you are just interested in the raw sequence, follow the steps below: 1. From http://genome.ucsc.edu, select "Tables" from the blue navigation bar at the top of the screen. 2. Select the following options: Clade: Mammal Genome: Horse Assembly: Sep. 2007 (Broad/equCab2) Group: Mapping and Sequence Tracks Track: Assembly Table: gold Region: Click the "define regions" button. You can either enter/paste your regions into the text box or click "Browse" to upload a file containing the regions Output format: Select "sequence" 3. Click the "get output" button 4. Click the "get sequence" button If you're interested in gene sequences rather than raw sequence, you can adjust the group, track and table selections in step 2 to select the tables you're interested in. You can experiment to find the set of options that works best for your needs. Please contact us again at [email protected] if you have any further questions. --- Steve Heitner UCSC Genome Bioinformatics Group -----Original Message----- From: [email protected] [mailto:[email protected]] On Behalf Of Vella Francesco Sent: Monday, January 09, 2012 6:34 AM To: [email protected] Subject: [Genome] Help to download sequences Dear all, I'm a PhD student of Genetics and I need help to download some sequences of the horse genome. I have a list of 300 genomic coordinates and I'm not able to download all sequences together e.g. chr5:23310585-23310809 chr5:22102893-22102671 chr5:30976526-30976748 chr5:22615258-22615040 chr5:29265468-29265689 chr5:35986306-35986514 chr5:22453092-22452871 chr5:25919581-25919364 chr5:35688325-35688108 Tank you for attention. Francesco. -- *Francesco Vella*, Doctoral Fellow Laboratory of Cytogenetics Department of Genetics and Microbiology "A. Buzzati-Traverso" University of Pavia Via Ferrata, 1 27100 Pavia, Italy Lab: ++39 382 985714 Mobile: 348 8034827 Fax : ++39 382 528496 e-mail: [email protected] _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
