Hi, I'm interested in the genomic location of 'BRCA1' human gene.
When I searched it from UCSC table browser selecting refFlat table, the transcript retrieved lies on Chr17 with transcript start as 41196311. And when I used UCSC Genome Browser for the same gene, chromosome start retrieved is 41196313. To be more specific, following are the coordinates obtained: UCSC table browser :chr17:41196311-41277500 UCSC Genome Browser:chr17:41,196,313-41,277,500 Even if we consider the start coordinates associated with table browser to be 0-based and assume that the Genome Browser converts it to 1-based, then also the results are not consistent. Could you please help us to understand how the UCSC Genome Browser process it and which one is the correct genomic location for the gene 'BRCA1' ? Thanks & Regards, Rekha Saini DISCLAIMER ========== This e-mail may contain privileged and confidential information which is the property of Persistent Systems Ltd. It is intended only for the use of the individual or entity to which it is addressed. If you are not the intended recipient, you are not authorized to read, retain, copy, print, distribute or use this message. If you have received this communication in error, please notify the sender and delete all copies of this message. Persistent Systems Ltd. does not accept any liability for virus infected mails. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
