Hello, I have a "how to" question regarding UCSC genome data . The assembly I am interested is Rat (RN4 v3.4) and the annotation is SAT1 (repeat masker track).
I have tried without suceeding to extract the Satellite alpha I repeated sequences as described in the published paper, Hamm CA et al 2009. On page 3 (of their .pdf) Hamm et al describe the following: "Rat genome sequence (rn4/version 3.4, Nov. 2004) and the annotation for repetitive elements were obtained from the UCSC Genome Database. Based on genomic co-ordinates of LINE elements provided by the UCSC database, 899,092 LINE sequences were extracted" Thank you in advance for any help with this. Cathy Cummings-Lorbetskie ____________________________________________ HECSB / DGSECC Hazard Identification Division Health Canada / Santé Canada Ottawa, ON K1A 0K9 AL / IL: 0803B Tel: 613-954-7140 Fax: 613-948-9413 E-mail: [email protected] _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
