If your data values for your negative strand values are actually negative below zero, use the altColor setting to define the color for negative values. See also: http://genome.ucsc.edu/goldenPath/help/wiggle.html
--Hiram Minho Chae wrote: > Hello, > > I cannot control the color of bigWig files by using "color" parameter > in the track line. > I used the following: > > track type=bigWig name="E2_0m+" db=hg18 visibility=2 > windowingFunction=maximum viewLimits=0:100 autoScale=off color=255,0,0 > bigDataUrl=http://server/data/E20m_Plus.bw > track type=bigWig name="E2_0m-" db=hg18 visibility=2 > windowingFunction=maximum viewLimits=-100:0 autoScale=off > color=0,0,255 bigDataUrl=http://server/data/E20m_Minus.bw > > The plus strand (first line) is perfectly fine showing red color > according to the RGB value of 255,0,0 > But for the minus strand (second line) does not show blue rather it > shows paled blue. > I tried with other colors, but all the colors I used for the minus > strand I am getting tone-down version of color. > How can I display proper colors for the minus strand? > > I would very appreciate any help regarding this problem. > > Thank you. > > Minho Chae _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
