Hi Barbara, You can download this type of data using the table browser (http://genome.ucsc.edu/cgi-bin/hgTables). Select the organism, e.g. Nematode/C. elegans/ce10 and then group: Comparative genomes, track: Conservation. There are a few tables there. If you click the describe table schema for each, lower on the screen you'll see a description section. Once you decide what you need you can select an output format and give it a file name to download the data.
To get the sequence for the elements, select the Elements table and output format 'sequence'. Please let us know if you have any additional questions: [email protected] - Greg Roe UCSC Genome Bioinformatics Group On 1/23/12 12:21 AM, Barbara Conradt wrote: > To whom it may concern, > > > > Is it possible to retrieve alignments (for example of an important > cis-acting element from 5 or 6 sequenced Caenorhabditis species (CaePb, > CaeSp111, CaeRem, Cb, CaeJap, CaeAng) as word documents or in other formats > that can be modified? Similarly, can one retrieve the sequences of the > 'Caenorhabditis Conserved Elements' that are indicated as purple bars at the > bottom of the default window? > > > > Thank you very much! > > > > Best regards, > > Barbara Conradt > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
