The alignments were *not* rerun with the corrected phylo tree.
Not enough of a difference to be important.

--Hiram

Ivan Adzhubey wrote:
> Was never very clear about exactly which of the trees (original or corrected 
> one) was actually used to produce final version of the alignments available 
> for 
> downloading. Would it be possible to elucidate now?
> 
> Thanks,
> Ivan
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