Hello, I am converting a large amount of archived microarray data from Hg18 to Hg19 using LiftOver. Most of my data has been converted successfully, however ALL of my data from Chr6 and Chr15 comes back #Deleted in new (313 records on Chr6, 629 on Chr15). This seems strange, since the data includes a wide variety of start and end positions, in various places on the chromosome. Here's a sample:
15 99149459 99322865 15 82983992 83243871 15 55282705 55538658 15 22577151 26079398 15 18668096 20060260 15 18741515 20060260 15 18741515 20060260 15 18668096 20060260 15 18741515 20060260 15 18668096 20060260 15 18741515 20060260 15 18668096 20060260 15 18668096 20060260 15 18668096 20060260 15 18668096 20060260 15 18668096 20060260 15 28741817 30226375 15 18668096 20060260 I looked over the "dropped or changed" data track linked in the help archive, but the missing/altered contigs don't seem to account for the Deleted results I'm getting (perhaps for a few, but certainly not all). I've tried pasting in data (individual and batched records) as well as uploading a txt file. Happy to attach either file in its entirety if that would help. Thanks for your assistance! Katrina Elsaesser Clinical Lab Scientist | Cytogenetics - Array Lab Seattle Children's 206-987-6233 LAB 206-987-5178 FAX 206-778-8066 CELL [email protected] OFFICE 4800 Sand Point Way NE, Seattle, WA 98105 MAIL M/S A6901, PO Box 5371 WWW seattlechildrens.org CONFIDENTIALITY NOTICE: This e-mail message, including any attachments, is for the sole use of the intended recipient(s) and may contain confidential and privileged information protected by law. Any unauthorized review, use, disclosure or distribution is prohibited. If you are not the intended recipient, please contact the sender by reply e-mail and destroy all copies of the original message. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
