Hello, Fabrice,
assembly: hg19.
If you turn off all tracks except the U133 track, then hit the Tables link
at the top of the page, the Table Browser will open with the proper table
selected (group: expression; track: Affy U133; table: affyU133).
It sounds like you want to save this to a file (48,000 items), so choose a
filename to put in "output file:"
Select output format: Selected fields.... [get output]
Then choose qName, tName, tStart, tEnd [get output]
This should give you all the coords for all the probes. If you are
interested
in only a subet of the genome, then put this information in the Position
box first.
best wishes,
--b0b kuhn
ucsc genome bioinfomratics group
On 2/12/2012 9:58 PM, Fabrice Tourre wrote:
> Dear list,
>
> I want to get all probe position information for Affymetrix
> HG-U133_Plus_2. I know how to get one by one. For example,
>
> For probeset 1053_at, one of probe (1053_at:15) information can be found at:
>
> http://genome.ucsc.edu/cgi-bin/hgc?hgsid=243151365&o=73649920&t=73649945&g=ct_AffymetrixHGU133Plus2Probe_4374&i=..%2Ftrash%2Fct%2Fct_genome_20f6_8a1770.bed+1053_at%3A15
>
> The position is: Position: chr7:73649921-73649945
>
> How can I get all probe position information using UCSC table browse?
>
> In my data analysis, I want to get the probe list which include SNP.
> So first, I want to the probe genome position in U133_Plus_2 array. I
> have checked in this page
> (http://www.affymetrix.com/support/technical/byproduct.affx?product=hg-u133-plus).
> But it seems I can not find a suitable file.
>
> Any suggestions would be greatly appreciated :)
> _______________________________________________
> Genome maillist - [email protected]
> https://lists.soe.ucsc.edu/mailman/listinfo/genome
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