Hi Mali, You can retrieve this information from the Table Browser (from main page, click on "Tables" on the top blue navigation bar). Make the following selections:
clade: Mammal genome: Mouse assembly: mm9 group: Genes and Gene Prediction Tracks track: UCSC Genes table: knownGene region: genome output format: selected fields from primary and related tables output file: enter a file name to save your results to a file, or leave blank to display results in the browser Click 'get output'. On the following page, select the appropriate fields (name, strand, for example), txStart, and txEnd from the knownGene table. You can also scroll down and select geneSymbol from the kgXref table. Click 'get output'. For more information on how to use the Table Browser, please refer to our help pages: http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html Feel free to contact us again at [email protected] if you have any further questions. --- Luvina Guruvadoo UCSC Genome Bioinformatics Group On 2/16/2012 2:42 AM, mali salmon wrote: > Dear Sir/Madam > Is it possible to get a bed file of mm9 UCSC genes in transcripts > coordinate (like those in genebank), so the TSS=1 (or 0) ? > Thanks > Mali > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
