Hi George, Please see this previous announcement with regards to the coloring scheme for CNV data:
https://lists.soe.ucsc.edu/pipermail/genome-announce/2011-March/000215.html It appears that the data you are looking at is using a non standardized coloring scheme. Here is an example of a track that conforms to the new CNV coloring scheme: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&c=chr21&g=dgv Hopefully this will help you understand what you are seeing. If you have further questions, please contact the mailing list: [email protected]. Vanessa Kirkup Swing UCSC Genome Bioinformatics Group ---------- Forwarded message ---------- From: George Kim Hung Leung [HTI] <[email protected]> Date: Mon, Feb 20, 2012 at 7:06 PM Subject: [Genome] About the CNV calls To: [email protected] Dear Sir I am now using Genome Browser to visualise the CNV data. There are different colors (dark red, red, green) indicating the CNV regions. However, I am not sure the colors representing. I could not find the information from the web. Would you mind suggesting me the indication of the colors ? Thank you for your attention. Regards George George KH, LEUNG BSc PhD Research Associate Department of Health Technology & Informatics The Hong Kong Polytechnic University Hung Hom, Kowloon, Hong Kong, CHINA E-mail: [email protected] Website: www.polyu.edu.hk/hti Tel: (852) 3400 8598 Fax: (852) 2362 4365 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Disclaimer: This message (including any attachments) contains confidential information intended for a specific individual and purpose. If you are not the intended recipient, you should delete this message and notify the sender and the University immediately. Any disclosure, copying, or distribution of this message, or the taking of any action based on it, is strictly prohibited and may be unlawful. The University specifically denies any responsibility for the accuracy or quality of information obtained through University E-mail Facilities. Any views and opinions expressed are only those of the author(s) and do not necessarily represent those of the University and the University accepts no liability whatsoever for any losses or damages incurred or caused to any party as a result of the use of such information. 75th Anniversary of The Hong Kong Polytechnic University INNOVATION AND APPLICATION FOR THE FUTURE _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
