Hi Anusha, Can you send us a session that contains an example of a custom track that you are having this issue with so we can try to reproduce it on our end?
Here is information on how to create a session: http://genome.ucsc.edu/goldenPath/help/hgSessionHelp.html Please reply to: [email protected] with your session link. Thanks! Vanessa Kirkup Swing UCSC Genome Bioinformatics Group ---------- Forwarded message ---------- From: Anusha Nagari <[email protected]> Date: Tue, Feb 21, 2012 at 10:40 AM Subject: [Genome] FW: [Fwd: Re: Color of minus strand of bigWig file] To: "[email protected]" <[email protected]> Hi, I used the following track line to visualize bigwig file of negative strand. It had negative values and hence I used altColor for representing blue. The track is perfectly fine displaying the blue color for the negative strand. track type=bigWig name="m-" db=hg18 visibility=2 windowingFunction=maximum viewLimits=-100:0 autoScale=off smoothingWindow=6 color=0,0,255 altColor=0,0,255 bigDataUrl=http://server:/Minus.bw However, when I am trying to save it as PDF file, the blue color is changed to pale blue. Could please help me in fixing this. Best, Anusha Nagari ________________________________ UT Southwestern Medical Center The future of medicine, today. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
