Hello,
I'm trying to load a BED file but I get the following error message:
Error File
'ID713_2A.ID713_2M.map.ab.sam.all.links.filtered.compared.T2_2Av2M_mini.bed.txt'
- Error line 2 of custom track: BED chromStarts[i]+chromStart must be less
than chromEnd.
As far as I can see, the numbers on column 2, chromStart, are less than column
3, chromEnd - see below.
track
name="/pub9/julie/ID713_fam002/svdetect/ID713_2A.ID713_2M.map.ab.sam.all.links.filtered.compared.bed.txt"
description="mate pairs involved in links" visibility=2 itemRgb="On"
chr10 100026040 100026515 HWUSI-EAS1643R:12:FC:2:26:14731:4761
0 + 100026040 100026515 190,190,190 2 100,100
0,475
chr10 100026703 100026869 HWUSI-EAS1643R:12:FC:2:11:4081:14654
0 + 100026703 100026869 190,190,190 2 100,100
0,166
chr10 100026158 100026610 HWUSI-EAS1643R:12:FC:4:73:16621:16526
0 + 100026158 100026610 0,0,0 2 100,100
0,452
chr10 100026407 100026841 HWUSI-EAS1643R:12:FC:4:106:16094:2084
0 + 100026407 100026841 0,0,0 2 100,100
0,434
chr10 100026624 100027013 HWUSI-EAS1643R:12:FC:4:22:12769:10441
0 + 100026624 100027013 0,0,0 2 100,100
0,389
I would be grateful for any suggestions.
Thank you,
Julie
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