Dear UCSC team, I am trying to analyze regions of the genome that have low mappability i.e mappability score 0.5 or higher. What would work best for me is a bed like file having just these regions in it (a plus would be having the score in the fourth column).
I looked at the bigWig files in the downloads section (wgEncodeCrgMapabilityAlign100mer and wgEncodeDukeMapabilityUniqueness35bp) but could not figure out how to convert those into bed or a format where I could easily extract the relevant regions for a mappability score threshold (in my case 0.5 or higher). Could you please help me? Thanks a lot, Vinayak -- -- "Hesitating to act because the whole vision might not be achieved, or because others do not yet share it, is an attitude that only hinders progress"... Mahatma Gandhi _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
