Hi Smitha, >From your previous email it appears that you want to create a BED file and upload it as a custom track. Have you looked at the BED format page (http://genome.ucsc.edu/FAQ/FAQformat.html#format1)?
You will need to create a BED file following the above instructions.Once you create this file following the guidelines above, go to the custom track page which you can get to from the gateway page (http://genome.ucsc.edu/cgi-bin/hgGateway) and click "add custom tracks". This will take you to the custom track tool. Select the appropriate clade, genome and assembly. Then you can either choose the upload the file off of your computer or paste the contents in the box below where it says "Paste URLs or data: ". Please see the User's Guide (http://genome.ucsc.edu/goldenPath/help/customTrack.html) if you need further help. If you have already done this and still having problems, can you specify where you are getting stuck? Please reply to the list ([email protected]) so that our entire team can help you. Vanessa Kirkup Swing UCSC Genome Bioinformatics Group ---------- Forwarded message ---------- From: Smitha Pulukuri <[email protected]> Date: Tue, Mar 6, 2012 at 10:05 AM Subject: [Genome] custom track To: [email protected] Hi > I'm unable to upload my RNA sequence file to build a custom track. please > help me .Give me the information on how to display. your links have helped > alot but still needs more details . > > Thanks > Smitha _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
