Hello, Diego. In our ENCODE tracks, older tables often get revoked in favor of new tables when the data in them becomes obsolete or otherwise incorrect. These older tables still exist and show up in the "All Tables" list, but will not show up under the individual track listings in the Table Browser. For some non-ENCODE tracks such as the RefSeq Genes track, there are many supporting tables that are necessary, but not directly linked to the main table. Again, tables such as these will show up in the "All Tables" list, but not under the individual track listings. Examples such as these explain why the "All Tables" count does not exactly match the count of tables listed in the individual tracks.
Please contact us again at [email protected] if you have any further questions. --- Steve Heitner UCSC Genome Bioinformatics Group -----Original Message----- From: [email protected] [mailto:[email protected]] On Behalf Of Diego Pereira Sent: Wednesday, March 07, 2012 12:13 PM To: [email protected] Subject: [Genome] Tables, tracks and groups in the table browser Dear all, While comparing the hg19 tables, tracks and groups contained at the table browser I found some slight differences in tables numbers that called my attention. Under the track "alltables" there are 7524 tables. However, the total ammount of tables in all the other tracks (excluding the "alltracks" track of course) is 6900. By reviewing the names of the tables that are not included under the other tracks, I found that aprox 440 are wgEncode tables that should be present in other tracks. I checked the last email sent by Kate Rosenbloom to see wheter the reason for this was related with the categorization of the new releases, but that was not the case. The wgEncode tables not included under a specific track (theoretically) belong to different groups including expression and regulation. Therefore, I would like to ask, what is the reason they are not included in specific groups or tracks? I can send you the list upon your request. Regards, Diego _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
