Hi Dan, Because you had the knownGene table selected, that is the table that the 3' UTR exons came from (you could have selected a different gene track and table and seen the same option for getting just the 3' UTRs).
When you choose to get UTR regions, the coordinates are calculated from the values in the txStart, txEnd, cdsStart, cdsEnd and strand columns of the gene table. I hope this answers your question. If you have further questions, please contact us again at [email protected]. -- Brooke Rhead UCSC Genome Bioinformatics Group On 3/16/12 3:43 PM, Dan Morton wrote: > I am trying to determine what table holds the data the is used when > downloading a custom track with genome table browser. > > For example: > If I enter a GeneName in the genome browser like "CDKN2A" > Then select tables. > Using the settings table: knownGene and output format "Custom track" > I can then select "3' UTR Exons" > And select "get custom track in file" > > This give me a file with the 3' UTR Exons for that gene. I am wondering > what table this is in when accessing the public mysql database " > genome-mysql.cse.ucsc.edu". > > Thanks, > Dan Morton > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
