Dear UCSC genome browser team
I had downloaded the all Refseq genes from the table browser. I see that for
some Gene symbols, for the same Transcript ID (Refseq ID) there are separate
entries with both the strands ( + and -). What does this mean ? Is this gene
present on both strands ? Or is it just an error in the file. This is with
reference to GRCh37/hg19 assembly.
I have attached the list of 276 genes which have this error.
Please clarify.
Thanks & Regards
--
Rahul Nahar
________________________________
This e-mail contains PRIVILEGED AND CONFIDENTIAL INFORMATION intended solely
for the use of the addressee(s). If you are not the intended recipient, please
notify the sender by e-mail and delete the original message. Further, you are
not to copy, disclose, or distribute this e-mail or its contents to any other
person and any such actions that are unlawful. This e-mail may contain viruses.
Ocimum Biosolutions has taken every reasonable precaution to minimize this
risk, but is not liable for any damage you may sustain as a result of any virus
in this e-mail. You should carry out your own virus checks before opening the
e-mail or attachment.
The information contained in this email and any attachments is confidential and
may be subject to copyright or other intellectual property protection. If you
are not the intended recipient, you are not authorized to use or disclose this
information, and we request that you notify us by reply mail or telephone and
delete the original message from your mail system.
OCIMUMBIO SOLUTIONS (P) LTD
AGAP9
AGSK1
AMY1A
AMY1B
AMY1C
ANKRD20A2
ANKRD20A3
ANXA8
ANXA8L1
ARL17A
ARL17B
BPY2
BPY2B
BPY2C
C17orf69
CBWD3
CDY1
CDY1B
CDY2A
CDY2B
CENPVL1
CFC1
CFC1B
CRHR1
CSAG2
CSAG3
CSPG4P1Y
CT45A4
CTAG1A
CTAG1B
CTAGE4
CXorf49
CXorf49B
CXorf51A
CXorf51B
DAZ3
DAZ4
DDX11L1
DEFB103A
DEFB103B
DEFB104A
DEFB104B
DEFB105A
DEFB105B
DEFB106A
DEFB106B
DEFB107A
DEFB107B
DEFB109P1B
DMRTC1
DMRTC1B
EIF3C
EIF3CL
F8A1
F8A2
F8A3
FAM156A
FAM156B
FAM25B
FAM25C
FAM25G
FAM41AY1
FAM41AY2
FAM75A5
FAM75A7
FAM95B1
FLJ20518
FOXD4L2
FOXD4L4
FRG2C
GOLGA2P2Y
GOLGA2P3Y
GOLGA8F
GOLGA8G
GSTT2
GTF2IP1
H2AFB1
H2AFB2
H2AFB3
H2BFXP
HIST2H2AA3
HIST2H2AA4
HIST2H3A
HIST2H3C
HIST2H4A
HIST2H4B
HSFX1
HSFX2
HSFY1
HSFY2
IMP5
KIAA1267
LIMS3
LIMS3L
LIMS3-LOC440895
LINC00204A
LINC00204B
LINC00230A
LINC00230B
LOC100093631
LOC100128977
LOC100129407
LOC100130148
LOC100133331
LOC100133920
LOC100287834
LOC100288570
LOC100506123
LOC100507404
LOC150527
LOC399939
LOC399940
LOC401074
LOC440297
LOC440894
LOC440895
LOC441495
LOC642826
LOC644172
LOC644246
LOC646743
LOC727849
LOC728855
LRRC37A
LRRC37A2
LRRC37A4
MAGEA2
MAGEA2B
MAGEA9
MAGEA9B
MAGED4
MAGED4B
MAPT
MGC57346
MIR1184-1
MIR1184-2
MIR1184-3
MIR1244-1
MIR1244-2
MIR1244-3
MIR3179-1
MIR3179-2
MIR3179-3
MIR3180-1
MIR3180-2
MIR3180-3
MIR3675
MIR4273
MIR4283-1
MIR4283-2
MIR4435-1
MIR4435-2
MIR4436B1
MIR4509-1
MIR4509-2
MIR4509-3
MIR4650-1
MIR4650-2
NSF
NSFP1
NXF2
NXF2B
OR2A1
OR2A20P
OR2A42
OR2A9P
OR4F16
OR4F29
OR4F3
PLGLB1
PLGLB2
PMS2L2
PNMA6A
PNMA6D
PPIAL4A
PPIAL4B
PPIAL4C
PPIAL4D
PPIAL4F
PRAMEF22
PRAMEF5
PRAMEF6
PRAMEF7
PRAMEF8
PRY
PRY2
RBMY1A1
RBMY1B
RBMY1D
RBMY1E
RBMY1F
RBMY1J
REXO1L2P
RGPD1
RGPD2
RGPD5
RGPD6
RHOXF2
RHOXF2B
RIMBP3B
RIMBP3C
RNF5P1
RSPH10B
RSPH10B2
SNAR-A10
SNAR-A11
SNAR-A14
SNAR-A3
SNAR-A4
SNAR-A5
SNAR-A6
SNAR-A7
SNAR-A8
SNAR-A9
SNORA11D
SNORA11E
SPAG11B
SPANXA1
SPANXA2
SPDYE8P
SSX2
SSX2B
SSX4
SSX4B
STH
TBC1D3
TBC1D3F
TISP43
TP53TG3
TP53TG3B
TP53TG3C
TRIM49L1
TRIM53P
TTL
TTTY1
TTTY17A
TTTY17B
TTTY17C
TTTY1B
TTTY2
TTTY21
TTTY21B
TTTY23
TTTY23B
TTTY2B
TTTY3
TTTY3B
TTTY4
TTTY4B
TTTY4C
TTTY6
TTTY6B
TTTY7
TTTY7B
TTTY8
TTTY8B
TTTY9A
TTTY9B
UGT2B10
ULK4P1
ULK4P2
ULK4P3
VCY
VCY1B
XAGE1A
XAGE1B
XAGE1C
XAGE1D
XAGE1E
XAGE2
XAGE2B
XKRY
XKRY2
ZNF26
ZNF84
_______________________________________________
Genome maillist - [email protected]
https://lists.soe.ucsc.edu/mailman/listinfo/genome
