Thanks Vanessa Do you have guidance on what these contigs represent? Why aren't they mappable?
-Archie On Tue, Mar 20, 2012 at 1:41 PM, Vanessa Kirkup Swing <[email protected]> wrote: > Hi Archie, > > Information on the chromosomes are found on the gateway pages > (http://genome.ucsc.edu/cgi-bin/hgGateway) for each assembly. Select the > assembly that you are interested in using the drop downs and then scroll > down the page. For hg19, there is a section called "Chromosome naming > scheme" which should have all the information to answer your questions. > > If you have further questions, please email the list: [email protected]. > > Vanessa Kirkup Swing > UCSC Genome Bioinformatics Group > > > ---------- Forwarded message ---------- > From: Archie Russell <[email protected]> > Date: Tue, Mar 20, 2012 at 11:57 AM > Subject: [Genome] chr Un, random, gl, etc > To: [email protected] > > > Hi, > > Can you tell me what the difference is between "random", "Un", and > "gl*" chromosomes? > > "Un" seems to be "unknown" but then what is "random"? What > would be a good way to describe chrUn_gl000211? > > Are these chromosomes alternate assemblies due to actually genetic > differences > between individuals, or would they exist even if just one person were > sequenced? > > Thanks, > Archie > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
