Hello, I'm in the process of mirroring a minimal installation of the genome browser on an ubuntu 10.04 web open tutorial. (http://enotacoes.wordpress.com/2009/09/03/installing-a-minimal-ucsc-mirror-in-ubuntu-jaunty-64-bits/). I've met some problems that I cannot solve.
Fisrt of all, I met the error when I try to connect to the browser appears as follows: Couldn't connect to database (null) on localhost as hguser. Can't connect to local MySQL server through socket '/var/lib/mysql/mysql.sock' (13) I've been searching on the mailing list for this issue similar to mine (such as https://lists.soe.ucsc.edu/pipermail/genome-mirror/2010-December/002245.html), but nothing helps. In my system, the file '/var/lib/mysql/mysql.sock' doesn't exits, instead only '/var/run/mysqld/mysqld.sock' exists. Secondly, I don't know which filename I should save following contents in /etc/cron.daily folder in the process of "Setup crontab to clean trash". Create a script at /etc/cron.daily (no . or _ allowed in the file name) with the following contents: #!/bin/bash find /var/www/genomebrowser/trash/ \! \( -regex "/var/www/genomebrowser/trash/ct/.*" \ -or -regex "/var/www/genomebrowser/trash/hgSs/.*" \) -type f -amin +5040 -exec rm -f {} \; find /var/www/genomebrowser/trash/ \( -regex "/var/www/genomebrowser/trash/ct/.*" \ -or -regex "/var/www/genomebrowser/trash/hgSs/.*" \) -type f -amin +10080 -exec rm -f {} \; Lastly, when I typed "mysql -youraccountoptions -e "create database hgcentral" The message was shown. "mysql: unknown option '-y'" Do you have any ideas about those errors? Thank you very much in advance! Ka-Kyung _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
