Hi,
I am using BLAT to align 454 reads back to an assembly that uses the same reads. I noticed that the axt output breaks across two alignments, while the psl output is within one line (see below). Is there a way to report the axt output as one alignment? Thanks in advance for the help. Vince ** PSL OUTPUT ** 381 2 0 0 5 9 9 13 + GAC44FG01BFDF9 392 0 392 chrI 31789037 24269501 24269897 14 164,6,48,3,6,6,6,6,19,7,80,7,18,7, 0,164,170,218,221,227,233,239,245,265,277,358,366,385, 24269501,24269666,24269673,24269722,24269727,24269735,24269742,24269749,24269756,24269775,24269785,24269865,24269872,24269890, ** AXT OUTPUT ** 0 chrI 24269502 24269782 GAC44FG01BFDF9 1 272 + 20942 <ALIGNMENT> 1 chrI 24269786 24269897 GAC44FG01BFDF9 278 392 + 9145 <ALIGNMENT> _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
