Hello, Hao,
You can use the Table Browser to get this relationship.
set for hg19:
group: Genes and Gene Predicions
track: refSeq Genes
identifiers: [paste list]
NM_001130986
output format: selected fields from primary and related tables
[get output]
check name, chrom, chromStart, chromEnd or whatever you want
in Linked Tables section:
check kgXref [Allow Selection From check Tables]
in hg19.kgXref:
check geneSymbol [get output]
result:
#hg19.refGene.name hg19.refGene.chrom hg19.refGene.txStart
hg19.refGene.txEnd hg19.kgXref.geneSymbol
NM_001130986 chr2 71693831 71913893 DYSF
best regards,
--b0b kuhn
ucsc genome bioinformatics group
On 4/4/2012 3:12 PM, Zhao, Hao wrote:
> Hi UCSC Genome Browser friends,
>
> I am writing to ask a very common question about converting refseq id to
> gene symbol. One solution is to look for the mapping in the kgXref table.
> However, there are still quite a number of refSeq IDs lack of gene symbols.
> For example, NM_001130986 is not in the kgXref table. But we find it
> correspond to a gene "DYSF" in the genome browser. I wonder if there is a
> more complete table than kgXref for the refSeq ID to gene symbol mapping.
>
> Thank you very much.
> Hao
>
> MD Anderson
> _______________________________________________
> Genome maillist - [email protected]
> https://lists.soe.ucsc.edu/mailman/listinfo/genome
_______________________________________________
Genome maillist - [email protected]
https://lists.soe.ucsc.edu/mailman/listinfo/genome
