Hi Fan, The track you are actually referring to is the RepeatMasker track: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=rmsk. In order to retrieve this information from the Table Browser, you will need to make the following selections:
group: Variation and Repeats track: RepeatMasker table: rmsk This data is also available on our downloads server: http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/rmsk.txt.gz I hope this clarifies things for you. Please contact us again at [email protected] if you have any further questions. --- Luvina Guruvadoo UCSC Genome Bioinformatics Group On 4/5/2012 8:30 AM, Xia, Fan wrote: > Hi, > > I used the TABLE function to batch retrieve simple repeats with hg19 version. > However, the data I got are NOT consistent with the Genome Browser. > > For instance, in Browser, chr9:135,771,980-135,772,012, I can clearly see a > simple-repeats track, (CTG)n chr9:135771988-135772007. But, when I tried > Table, it said "# No results in given region." > > I downloaded the simpleRepeat.txt.gz from UCSC ftp, and could not found the > track shown in the Browser. > > I hope someone can address this issue. > > Thanks, > Fan > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
