Hi Srinivas, Please see the description pages for each track that you are looking at for information regarding the color conventions. Here is a link to the track description page for hg19, Layered H3K4Me1 Track:
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&c=chr22&g=wgEncodeRegMarkH3k4me1 In this case, the color coding represents a particular cell line. If you have further questions, please email the list: [email protected]. Vanessa Kirkup Swing UCSC Genome Bioinformatics Group ---------- Forwarded message ---------- From: srinivas naidu kovvali <[email protected]> Date: Tue, Apr 17, 2012 at 4:51 AM Subject: [Genome] one more querry To: [email protected] Dear Dr. Steve Heitner, thank you very much for the immediate response which almost solved my queries, however, a few thing are remaining here with again i am attahcing pdf of a browser, in that when i am looking at H3K27AC, H3KME3, there is a scale, for examples 0 to 150 for H3K27AC, 0 to 50 for h3kme3, where as i selected cell lines of my interest and there are in blue orange colors, do these scales have any importance?? appearing of the color as per the selected cell lines indicates that, that particular region has methylation, this what i infer my self by seeing the data. am i correct or do the scales have any significance?? kindly address these queries thanking you sincerely srinivas kovvali -- Srinivas Kovvali J.R.F Anthropological Survey of India, Southern Regional center, Mysore _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
