Hi UCSC genome browser, May I ask you a question, how could I get RefSeq gene annotations from UCSC database?
For example, the example of annotation we need is that: name chrom strand txStart txEnd cdsStart cdsEnd exonCount NR_024540 chr1 - 4224 19233 19233 19233 11 NM_001005484 chr1 + 58953 59871 58953 59871 1 NM_001005277 chr1 + 357521 358460 357521 358460 1 NM_001005221 chr1 + 357521 358460 357521 358460 1 NM_001005224 chr1 + 357521 358460 357521 358460 1 NM_001005277 chr1 - 610958 611897 610958 611897 1 NM_001005221 chr1 - 610958 611897 610958 611897 1 NM_001005224 chr1 - 610958 611897 610958 611897 1 NR_024321 chr1 - 751449 752765 752765 752765 1 NR_015368 chr1 + 752926 779603 779603 779603 7 NM_152486 chr1 + 850983 869824 851184 869396 14 NM_015658 chr1 - 869445 884542 869936 884483 19 NM_198317 chr1 + 885829 890958 885936 890434 12 NM_032129 chr1 + 891739 900347 891774 899818 16 NM_021170 chr1 - 924205 925415 924301 925216 4 NM_001142467 chr1 - 924207 925415 924301 925216 3 NM_005101 chr1 + 938709 939782 938816 939721 2 NM_198576 chr1 + 945365 981355 945415 980224 36 NM_017891 chr1 - 1007060 1041599 1008135 1016786 10 NM_001130045 chr1 + 1099148 1123176 1104458 1123090 16 NM_153254 chr1 + 1104939 1111106 1105296 1110385 9 NM_004195 chr1 - 1128750 1131952 1129086 1131814 5 Thanks. Best Regards, Hong Xu _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
