Hi Peng,

The current version of validateFiles handles BAMs.  It is available as 
an executable here:

http://hgdownload.cse.ucsc.edu/admin/exe/

Or you can compile it yourself from source:
http://hgdownload.cse.ucsc.edu/downloads.html#source_downloads

--
Brooke Rhead
UCSC Genome Bioinformatics Group



On 4/17/12 7:24 PM, Peng Yu wrote:
> Hi,
>
> The "validateFiles" command on my machine is old, which can not
> validate bam files. Is a newer version able to handle bam files?
>
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