Hello, Nathan.

I recommend contacting the folks listed in the Credits section of the
description page you referenced.

Please contact us again at [email protected] if you have any further
questions.

---
Steve Heitner
UCSC Genome Bioinformatics Group

-----Original Message-----
From: [email protected] [mailto:[email protected]] On
Behalf Of Nathan Johnson
Sent: Monday, April 30, 2012 1:25 AM
To: [email protected]
Subject: [Genome] Caltech RNASeq processing

Hi

Could you provide more details about how the following tracks were
generated? I see the reads have been mapped with TopHat, but I'd like to
know specific details(parameters), and whether any pre/post processing was
done.

        
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeCaltechRnaSeq

Thanks


Nathan Johnson
Senior Scientific Programmer
Ensembl Regulation
European Bioinformatics Institute
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD

http://www.ensembl.info/
http://twitter.com/#!/ensembl







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