Hi, I tried to get a table of the canonical UCSC genes from the hg19 assembly in BED12 format from the table browser (with the blockstarts and blocksizes fields corresponding to exons). When I select BED as output format, I get BED3 data - I tried chosing "selected fields from primary and related tables" as output format and I can find almost all the data for the 9 optional BED fields in the hg19.refGene table, but not for the blocksizes field (exon end positions are there, but not exon sizes). Is there an easy way to get BED12 formatted data from the table browser ? cheers, Andreas
-- Andreas Schüler PhD student, Evolutionary Bioinformatics Group Westfalian Wilhelms University of Münster Tel: + 49 (0) 251 83 21632 Fax: + 49 (0) 251 83-24668 http://www.uni-muenster.de/evolution/bioinfo _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
