Hi Jinjun,

The ENCODE data sets have specific terms for publication:

http://genome.ucsc.edu/ENCODE/terms.html

There are also some general Genome Browser citation guidelines.

http://genome.ucsc.edu/cite.html

It sounds like you are not doing a global analysis of ENCODE data, so 
even if the specific data sets you are using are still within the 
9-month data restriction window, no further permission is required.

Please write back to [email protected] if you have any further questions.

--
Brooke Rhead
UCSC Genome Bioinformatics Group


On 5/9/12 11:03 AM, Cheng, Jinjun wrote:
> Dear Sir/Madam,
>
> I am a graduate student and doing my thesis right now. I want to
> make  a figure based on the raw data from UCSC genebrowser including Histone
modification profile and RIKEN CAGE data at specific genomic locus.
> I will appreciate your permission very much. And do I need to get
permission from original data provider ?
>
>
> Jinjun Cheng
> Downing lab
> Dept of pathology
> ST Jude Children's research hospital
> Memphis, TN 38105
> 901-595-2514
>
>
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