Hello Thanks for your replies.
I tried hosting this on galaxy as well, but that doesn't work either. https://main.g2.bx.psu.edu/u/dcgdftvcdv/h/bam-view I chacked the bam file using samscope (very nice find: http://samscope.dna.bio.keio.ac.jp/wiki/index.php/Samscope) and the data should be there: http://rna-seqlyze-data.pfeifer.ch/various/SRR030765-2.bam.Samscope-screenshot.png Any other suggestions? On 2012-05-10 01:06, Galt Barber wrote: > We don't see any problems with the urls. > curl -I on the .bam and .bam.bai show a good response. > > If you think that your bam is correct, > try hosting it on some other http server and see > if things improve. Actually, I tried this on > your data and it did not help. > > Check the content of your bam. > Even when we zoom out to the entire chromosome I don't see anything. > > The 200 and 206 calls are normal for bigDataUrl > which access blocks of data. It often jumps to > a position and resumes reading from there via > byterange header request and the server responds > with a 206. > > -Galt > > On 05/09/12 15:42, Hiram Clawson wrote: >> Good Afternoon Patrick: >> >> The URL variable hgt.customText may work better if it is a URL >> to a small file with your track definition line. To see examples >> of this type of reference, note references from this page: >> http://genome.ucsc.edu/goldenPath/customTracks/custTracks.html >> >> --Hiram >> >> >> Patrick Pfeifer wrote: >>> Hello >>> >>> I have a custom bam track with corresponding index (.bai) at >>> >>> http://rna-seqlyze-data.pfeifer.ch/custom-tracks/S.solfataricus/SRR030765-2.bam.bai >>> >>> You *should* be able to see it using this url: >>> >>> http://archaea.ucsc.edu/cgi-bin/hgTracks?org=Sulfolobus+solfataricus&position=chr%3A1-35000&hgt.customText=track%20type=bam%20name=xxxxxxxxxxxxxxxxxxxx%20bigDataUrl=http://rna-seqlyze-data.pfeifer.ch/custom-tracks/S.solfataricus/SRR030765-2.bam >>> >>> However, it does not work for some me for some reason. The track >>> desription shows up in the browser and I see some HTTP HEAD & GET >>> requests on my server, all with status 200 or 206, but there is no data >>> visible in the browser. >>> >>> Can you give me any hints what I am doing wrong here? >>> >>> Thank you >>> >>> Patrick >> _______________________________________________ >> Genome maillist - [email protected] >> https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
