Hi Tom, A good place to start to find out about how the data is created for the track is by going to the track description page. Here is the track description page for the anoCar2 assembly:
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=anoCar2&c=chr5&g=rmsk The description page has a link to this FAQ which tells you that the parameters are listed in the README: http://genome.ucsc.edu/FAQ/FAQdownloads#download16 Here is a link to the README for anoCar2: http://hgdownload.cse.ucsc.edu/goldenPath/anoCar2/bigZips/ I hope this helps you figure out why there are differences. If you have further questions, please email the list: [email protected]. Vanessa Kirkup Swing UCSC Genome Bioinformatics Group ---------- Forwarded message ---------- From: wangdp <[email protected]> Date: Mon, May 21, 2012 at 11:43 PM Subject: [Genome] what is the parameters or library of rmsk.txt for anole genome To: genome <[email protected]> Dear UCSC Genome Browser team, Could you please tell me what is the parameters or library of rmsk.file in UCSC ftp server (/apache/htdocs/goldenPath/anoCar2/database/)? Is there any specific parameters for anole genome? I got not identical results with rmsk.txt when performing the local repeatmakser software. Many thanks, With best, Tom _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
