Hello, I noticed that when I create bedGraph tracks, there are several deferent shades to the color that I specify in the header with "color" flag. I can't find info on why such things appear (I think automatically in my case) and how to interpret it.
Here is an example session: http://genome.ucsc.edu/cgi-bin/hgTracks?hgS_doOtherUser=submit&hgS_otherUserName=Siarheimanakov&hgS_otherUserSessionName=bedgraph_windower You can see that the color of blue and red tracks take different shades near the top of the graphs. Here is the top of one of the bedGraph file that does it: track type=bedGraph name=chr17_5P_Evelyn.w1000s200.mean.bedgraph color=0,0,255 maxHeightPixels=100:100:11 visibility=full chr17 27425305 27426305 0.05 chr17 27425505 27426505 0 chr17 27425705 27426705 0 chr17 27425905 27426905 0.05 chr17 27426105 27427105 0.05 chr17 27426305 27427305 0.05 chr17 27426505 27427505 0.05 chr17 27426705 27427705 0.092 chr17 27426905 27427905 0.15 Coordinates are overlapping, maybe that has something to do with different shades? If so, what would it mean? And, finally, one more question -- what determines the lower value in the display of a bedTrack? In the example in this e-mail you can see that the black track starts at 1 while all red and blue tracks start at 0. thanks very much, Sergei _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
