Hi Amy, Note, that if you try the reverse query, hg19 -> hg18, that will work, since those coords do exist in hg19.
Also, you might find the 'hg18 diff' track (i.e., Contigs new to GRCh37/(hg19), not carried forward from NCBI build 36(hg18)) on hg19 to be useful. There's also a hg19 diff track on hg18. - Greg On 5/31/12 9:10 AM, Greg Roe wrote: > Hi Amy, > The error message "deleted in new" is a little misleading, as it is > hg18 that does not contain those coordinates, > chr14:107,148,769-107,182,631. The very end of chr14 on hg18 is > 106,368,585, which is before the starting coordinate you have of > 107,148,769. > > If you have any additional questions, please reply to: > [email protected] > - > Greg Roe > UCSC Genome Bioinformatics Group > > On 5/21/12 4:44 AM, Amy McAlpine wrote: >> Hi, >> I wish to convert from hg18 to hg19 and have tried so using the Batch >> Lift Converter but I keep seeing an error message which states this >> region is deleted in the new build. The region of interest is >> chr14:107148769-107182631. Could you explain how this can be deleted >> in the new version as I don't really understand. >> >> Many Thanks, >> Amy McAlpine >> _______________________________________________ >> Genome maillist - [email protected] >> https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
