Hi Christopher,

You can convert your BED file into our bigBed format, which was designed 
to mitigate the problem of transferring all of the data in large BED files:

http://genome.ucsc.edu/goldenPath/help/bigBed.html

If you have further questions, please contact us again at 
[email protected].

--
Brooke Rhead
UCSC Genome Bioinformatics Group


On 6/1/12 9:40 AM, Christopher Callaway wrote:
> I have a 654MB *.bed file that I would like to load as a custom
> track  to the UCSC browser. But, I get an error stating that it is too large.
>
> Christopher W. Callaway
> University of Utah
> Dept. of Pediatrics
> Division of Neonatology
> 417 Wakara Way
> #2222
> Salt Lake City, UT 84108
>
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