Hi Archie, No, there's no way to configure it to work this way right now. We will log this as a feature request.
If you have any additional questions, please reply to: [email protected] - Greg Roe UCSC Genome Bioinformatics Group On 5/25/12 6:02 PM, Archie Russell wrote: > Ah OK, thanks Brook. I get it now. > > Can you change the initial display so it shows the coordinate without > adding on > the flanking bases, e.g. when I search for it I get this, maybe it could > just > show the actual base? > > E.g. change > > Simple Nucleotide Polymorphisms (dbSNP 135) > > rs76417519 at chr1:117142391-117142891 > <http://genome.ucsc.edu/cgi-bin/hgTracks?position=chr1:117142391-117142891&hgsid=273423697&snp135=pack&hgFind.matches=rs76417519,> > > to > > Simple Nucleotide Polymorphisms (dbSNP 135) > > rs76417519 at chr1:117142641 > <http://genome.ucsc.edu/cgi-bin/hgTracks?position=chr1:117142391-117142891&hgsid=273423697&snp135=pack&hgFind.matches=rs76417519,> > > > > > > On Fri, May 25, 2012 at 5:25 PM, Brooke Rhead<[email protected]> wrote: > >> Hi Archie, >> >> When you paste rs76417519 into the position/search box on the Genome >> Browser, the link you get is a result that says: >> >> rs76417519 at chr1:117142391-117142891 >> >> This is position chr1:117,142,641, with 500 extra bases that provide >> "padding" on each side of the SNP. The SNP itself is still in the same >> location. (We add the padding to avoid suddenly zooming people in to a >> single base pair.) >> >> If you have further questions, please contact us again at >> [email protected]. >> >> -- >> Brooke Rhead >> UCSC Genome Bioinformatics Group >> >> >> >> On 5/25/12 11:31 AM, Archie Russell wrote: >> >>> Hi >>> >>> I'm looking into rs76417519 >>> >>> I downloaded a file a while back with positions on hg19 >>> and it says this SNP is at chr1:117,142,640-117,142,641 >>> >>> But when I look it up now at the browser I see it as >>> position chr1:117,142,391 >>> >>> Any ideas why this is the case? Were the SNP positions >>> updated? >>> >>> Thanks >>> Archie >>> >>> >>> >>> The line from the file I downloaded some time ago: >>> >>> 1478 chr1 117142640 117142641 rs76417519 0 + G G A/G genomic single >>> by-cluster,by-frequency 0.005297 0.051189 missense exact 1 8 >>> BCM-HGSC-SUB,BL,BUSHMAN,**ENSEMBL,ILLUMINA,MPI_MOLGEN,**NHLBI-ESP,PJP, 2 >>> A,G, >>> 12.000000,4507.000000, 0.002655,0.997345, >>> ______________________________**_________________ >>> Genome maillist - [email protected] >>> https://lists.soe.ucsc.edu/**mailman/listinfo/genome<https://lists.soe.ucsc.edu/mailman/listinfo/genome> >>> > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
