Good Morning Ettore:
The only genome with long enough chromosomes to use the extended
bin indexing numbers is the Opossum/monDom5.
To see extended bin indexing examples, you can view them on the 'gold' table:
mysql --user=genome --host=genome-mysql.cse.ucsc.edu \
-A -e 'select bin from gold where bin > 4680;' monDom5
Please note the binTest exercise program in the source tree:
http://genome-source.cse.ucsc.edu/gitweb/?p=kent.git;a=blob;f=src/hg/lib/tests/binTest.sh
--Hiram
Ettore Rizzo wrote:
> Hi,
> I'm working with the bin indexing system used in your genome browser.
> I've visited this web page where is it possible to find some suggestion to
> implement this indexing system:
> http://genomewiki.ucsc.edu/index.php/Bin_indexing_system#Introduction.
> I've downloaded some tables to check if my code work well.
> I didn't find any problem with the standard bin indexing system but I'm not
> able to find a table that use the extended version of this indexing system.
> Can you let me know which table have some row where is possible to find a
> bin created with the extended version.
> Thanks in advance
> Ettore Rizzo
>
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