Hello, Giovanni. Connecting segmental duplications is not something the Browser is designed to do. I recommend using the tools used by the authors of the papers you have seen that do this. For example, in the article at http://genomebiology.com/2003/4/4/R25, the authors used a tool called GenomePixelizer (http://www.atgc.org/GenomePixelizer/GenomePixelizer_Welcome.html) to generate the graphic seen in Figure 1. If the results of GenomePixelizer are not what you had envisioned, the authors of similar papers are certain to have included their methods for generating their figures as well. If not, you can always contact the authors directly to find out which tools they used.
Please contact us again at [email protected] if you have any further questions. --- Steve Heitner UCSC Genome Bioinformatics Group -----Original Message----- From: [email protected] [mailto:[email protected]] On Behalf Of Pauletti, Giovanni Sent: Monday, June 04, 2012 7:19 PM To: '[email protected]' Subject: [Genome] Segemental duplications graphics Hi to all, Would it possible to connect graphically the two members of a segmental duplication. You click on one and the other (if on the same chromosome) is identified by a connecting line. I have seen papers in which a large number of DS's were connected one to the other by a line or curve. I doubt they did them one at the time. Thanks, G. Pauletti, Ph.D. UCLA School of Medicine ________________________________ IMPORTANT WARNING: This email (and any attachments) is only intended for the use of the person or entity to which it is addressed, and may contain information that is privileged and confidential. You, the recipient, are obligated to maintain it in a safe, secure and confidential manner. Unauthorized redisclosure or failure to maintain confidentiality may subject you to federal and state penalties. If you are not the intended recipient, please immediately notify us by return email, and delete this message from your computer. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
