Hello,
I downloaded hg18ToHg19.over.chain to left my bed file.
but I found the chrom location for minus strand region in the file isnot
represented in gff format.
for example,
chain 1322981 chr1 247249719 + 2475290 2488984 chr1 249250621 - 246751494
246765188 1650
the location in hg19 is chr1 249250621 - 246751494 246765188, the number
246751494 and 246765188 are count from the END of chromosome.
could you please tell me why did not use gff format? and do you have gff format
for hg18ToHg19.over.chain file?
thank,
Yu
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