Hi All I am trying to find the location of transcription start site of a gene in the genome, I mean the genomic base number of the starting base. how to do that. like in the link below what is the base position number in genome of the starting base in that sequence, that is the "T" ...how to find that?
link: http://genome.ucsc.edu/cgi-bin/hgc?hgsid=277869181&g=htcDnaNearGene&i=uc008ufs.2&c=chr4&l=115669260&r=115690507&o=knownGene&hgSeq.promoter=on&boolshad.hgSeq.promoter=0&hgSeq.promoterSize=1000&hgSeq.utrExon5=on&boolshad.hgSeq.utrExon5=0&hgSeq.cdsExon=on&boolshad.hgSeq.cdsExon=0&hgSeq.utrExon3=on&boolshad.hgSeq.utrExon3=0&hgSeq.intron=on&boolshad.hgSeq.intron=0&boolshad.hgSeq.downstream=0&hgSeq.downstreamSize=1000&hgSeq.granularity=gene&hgSeq.padding5=0&hgSeq.padding3=0&boolshad.hgSeq.splitCDSUTR=0&hgSeq.casing=exon&boolshad.hgSeq.maskRepeats=0&hgSeq.repMasking=lower&submit=submit Thanks in advance ! Simanta Pathak UT Southwestern Med Center _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
