Hi there, I tried to follow precisely the instructions in http://genome.ucsc.edu/goldenPath/help/vcf.html but my tracks are always empty. I thought it might be the missing "chr" but then I saw your example file is on ENSEMBL format, i.e. without "chr" http://genome.ucsc.edu/goldenPath/help/examples/vcfExample.vcf.gz I was trying to pass single sample VCFs while the example is multi-sample, so I tried a multi-sample one but the browser was empty again.
My file are bgzipped and indexed with tabix, I don't receive any error message. I checked with a zcat the file to contain data. They have been generated with GATK, and the file format is v4.1 which I understand should be supported. the track line I'm using is track type=vcfTabix name=PE1Variants db=hg19 visibility=pack maxWindowToDraw=200000 bigDataUrl=https://myurl/P E1/PE1.noref.vcf.ucsc.vcf.gz I'm attaching here one of these files. Any clue of what I must be missing? thanks for your help, Francesco --------------------------------------------------------------------------------- Francesco Lescai, PhD, EDBT Senior Research Associate in Genome Analysis University College London Faculty of Population Health Sciences Dept. Genes, Development & Disease ICH - Molecular Medicine Unit, GOSgene team 30 Guilford Street WC1N 1EH London UK email: [email protected]<mailto:[email protected]> phone: +44.(0)207.905.2274 [ext: 2274] --------------------------------------------------------------------------------
_______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
