Hi Mahdi, Unfortunately, there is no way to identify the RefSeq IDs that did not match using the Table Browser. You will need to directly compare your original ID list with the list of IDs from the Table Browser output. This previously answered question provides more details: https://lists.soe.ucsc.edu/pipermail/genome/2012-February/028393.html
I hope this information is useful and answers your question. Please contact us again at [email protected] if you have any further questions. --- Luvina Guruvadoo UCSC Genome Bioinformatics Group On 6/21/2012 1:49 PM, Mahdi Ghani wrote: > To whom it may concern, > > I have a list of>2000 gene names (identifier) and need to extract the gene' > chromosomal coordinates (and other information) using the UCSC table browser > by pasting the list of identifiers. Because I am receiving a warning/error > message that almost 100 of the given identifiers have no match in table > refGene, field name etc, I have to remove that 100 problematic identifiers > from my list but I don't have their names. Currently I see only one name as > an example. This apparently happen for my other queries too. > > How can I see the error causing identifiers to remove them from my input > list? > > I appreciate your consideration in this regard. > > Best wishes, > > Mahdi Ghani > > Postdoctoral fellow > > Tanz Neuroscience building > > University of Toronto > > > > > > > > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
