Hi there, I was if there has been a mix-up of 0 base and1 base in dbsnp-135 files.
Most data are 0 based, while there are around 5473 entires which seem to be in 1 base For e.g. with 1 base chr1 1142403 1142403 rs11466671 0 - chr1 1147978 1147978 rs34348110 0 - chr1 1147985 1147985 rs33986159 0 - chr1 1986733 1986733 rs70937055 0 + chr1 7996478 7996478 rs9657973 0 - chr1 8099134 8099134 rs2307539 0 - While the remaining > 3million SNPs are 0 base chr1 10491 10492 rs55998931 0 + chr1 10582 10583 rs58108140 0 + chr1 14929 14930 rs75454623 0 + chr1 20244 20245 rs71262674 0 - chr1 20303 20304 rs71262673 0 - chr1 33494 33495 rs75468675 0 + Please let me know, why this discrepancy here, if for any reasons. cheers CN _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
