Hi Zhu, featureBits doesn't do exactly what you're trying to get out of it, and unfortunately we don't have a tool that will do this. The only way to do this that we know of is writing your own program.
Sorry we couldn't be of more help. Please let us know if you have any additional questions: [email protected] - Greg Roe UCSC Genome Bioinformatics Group On 6/18/12 11:38 AM, Zhu Wang wrote: > Hi, > I am using featureBits with "-or" option (many thanks to Steve) to collapse > annotation files from refseq, rgd,, and ensembl. During the process, the same > genes/transcripts from the different origins are collapsed into a single > annotation record as I wanted. However, I also found that some real genes are > diminished during the process. These genes are usually within another big > long gene. Do you know how to do the collapse while keeping these real genes? > Thank you. > Zhu > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
