Hello. Yes, the liftOver tool has the ability to convert coordinates from more than just the old assembly to the new assembly of the same organism (as with mm8 to mm9). If you look at the web-based liftOver tool at http://genome.ucsc.edu/cgi-bin/hgLiftOver, you will see that if you set "Original Genome" and "Original Assembly" to mouse/mm8, there are many options under "New Genome" other than mouse. The liftOver tool gives you the equivalent coordinates in whichever genome/assembly you choose.
Please contact us again at [email protected] if you have any further questions. --- Steve Heitner UCSC Genome Bioinformatics Group -----Original Message----- From: [email protected] [mailto:[email protected]] On Behalf Of ? ? ? Sent: Tuesday, June 26, 2012 4:26 AM To: [email protected] Subject: [Genome] Question about liftover BODY{FONT-FAMILY: Gulim;FONT-SIZE: 10pt;} DIV,P {margin-top:2px;margin- bottom:2px;} Hi,all. I have a question about LiftOver tool. I tried to conversion mm8 to mm9, but... It was my mistake, I click human. But liftover tool was running! So, Question is... Is it possible convert genome size difference species? I mean, convert mouse to human or human to mouse?? thanks. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
